Ensure I/O buffers in libufs(3) are 128-byte aligned.

Various disk controllers require their buffers to be aligned to a
cache-line size (128 bytes). For buffers allocated in structures,
ensure that they are 128-byte aligned. Use aligned_malloc to allocate
memory to ensure that the returned memory is 128-byte aligned.

While we are here, we replace the dynamically allocated inode buffer
with a buffer allocated in the uufsd structure just as the superblock
and cylinder group buffers do.

This can be removed if/when the kernel is fixed. Because this problem
has existed on one I/O subsystem or another since the 1990's, we
are probably stuck with dealing with it forever.

The problem most recent showed up in Azure, see:
https://reviews.freebsd.org/D41728
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=267654
Before these fixes were applied, it was confirmed that the changes
in this commit also fixed the issue in Azure.

Reviewed-by: Warner Losh, kib
Tested-by: Souradeep Chakrabarti of Microsoft (earlier version)
PR: 267654
Differential Revision: https://reviews.freebsd.org/D41724

Remove $FreeBSD$: one-line sh pattern

Remove /^\s*#[#!]?\s*\$FreeBSD\$.*$\n/

pkgbase: Put ufs related tools and lib in their own package

It's not really useful in a jail or in a mdroot or even if a users
wants to do a full zfs machine.

Reviewed by: mckusick
Differential Revision: https://reviews.freebsd.org/D36227

Move the ability to search for alternate UFS superblocks from fsck_ffs(8)
into ffs_sbsearch() to allow use by other parts of the system.

Historically only fsck_ffs(8), the UFS filesystem checker, had code
to track down and use alternate UFS superblocks. Since fsdb(8) used
much of the fsck_ffs(8) implementation it had some ability to track
down alternate superblocks.

This change extracts the code to track down alternate superblocks
from fsck_ffs(8) and puts it into a new function ffs_sbsearch() in
sys/ufs/ffs/ffs_subr.c. Like ffs_sbget() and ffs_sbput() also found
in ffs_subr.c, these functions can be used directly by the kernel
subsystems. Additionally they are exported to the UFS library,
libufs(8) so that they can be used by user-level programs. The new
functions added to libufs(8) are sbfind(3) that is an alternative
to sbread(3) and sbsearch(3) that is an alternative to sbget(3).
See their manual pages for further details.

The utilities that have been changed to search for superblocks are
dumpfs(8), fsdb(8), ffsinfo(8), and fsck_ffs(8). Also, the prtblknos(8)
tool found in tools/diag/prtblknos searches for superblocks.

The UFS specific mount code uses the superblock search interface
when mounting the root filesystem and when the administrator doing
a mount(8) command specifies the force flag (-f). The standalone UFS
boot code (found in stand/libsa/ufs.c) uses the superblock search
code in the hope of being able to get the system up and running so
that fsck_ffs(8) can be used to get the filesystem cleaned up.

The following utilities have not been changed to search for
superblocks: clri(8), tunefs(8), snapinfo(8), fstyp(8), quot(8),
dump(8), fsirand(8), growfs(8), quotacheck(8), gjournal(8), and
glabel(8). When these utilities fail, they do report the cause of
the failure. The one exception is the tasting code used to try and
figure what a given disk contains. The tasting code will remain
silent so as not to put out a slew of messages as it trying to taste
every new mass storage device that shows up.

Reviewed by: kib
Reviewed by: Warner Losh
Tested by: Peter Holm
Differential Revision: https://reviews.freebsd.org/D36053
Sponsored by: The FreeBSD Foundation

pkgbase: Put a lot of binaries and lib in FreeBSD-runtime

All of them are needed to be able to boot to single user and be able
to repair a existing FreeBSD installation so put them directly into
FreeBSD-runtime.

Reviewed by: bapt, gjb
Differential Revision: https://reviews.freebsd.org/D21503

Separate kernel crc32() implementation to its own header (gsb_crc32.h) and
rename the source to gsb_crc32.c.

This is a prerequisite of unifying kernel zlib instances.

PR: 229763
Submitted by: Yoshihiro Ota <ota at j.email.ne.jp>
Differential Revision: https://reviews.freebsd.org/D20193

In preparation for adding inode check-hashes, clean up and
document the libufs interface for fetching and storing inodes.
The undocumented getino / putino interface has been replaced
with a new getinode / putinode interface.

Convert the utilities that had been using the undocumented
interface to use the new documented interface.

No functional change (as for now the libufs library does not
do inode check-hashes).

Reviewed by: kib
Tested by: Peter Holm
Sponsored by: Netflix

Refactoring of reading and writing of the UFS/FFS superblock.
Specifically reading is done if ffs_sbget() and writing is done
in ffs_sbput(). These functions are exported to libufs via the
sbget() and sbput() functions which then used in the various
filesystem utilities. This work is in preparation for adding
subperblock check hashes.

No functional change intended.

Reviewed by: kib

Correct fsck journal-recovery code to update a cylinder-group
check-hash after making changes to the cylinder group. The problem
was that the journal-recovery code was calling the libufs bwrite()
function instead of the cgput() function. The cgput() function updates
the cylinder-group check-hash before writing the cylinder group.

This change required the additions of the cgget() and cgput() functions
to the libufs API to avoid a gratuitous bcopy of every cylinder group
to be read or written. These new functions have been added to the
libufs manual pages. This was the first opportunity that I have had
to use and document the use of the EDOOFUS error code.

Reviewed by: kib
Reported by: emaste and others

Continuing efforts to provide hardening of FFS, this change adds a
check hash to cylinder groups. If a check hash fails when a cylinder
group is read, no further allocations are attempted in that cylinder
group until it has been fixed by fsck. This avoids a class of
filesystem panics related to corrupted cylinder group maps. The
hash is done using crc32c.

Check hases are added only to UFS2 and not to UFS1 as UFS1 is primarily
used in embedded systems with small memories and low-powered processors
which need as light-weight a filesystem as possible.

Specifics of the changes:

sys/sys/buf.h:
Add BX_FSPRIV to reserve a set of eight b_xflags that may be used
by individual filesystems for their own purpose. Their specific
definitions are found in the header files for each filesystem
that uses them. Also add fields to struct buf as noted below.

sys/kern/vfs_bio.c:
It is only necessary to compute a check hash for a cylinder
group when it is actually read from disk. When calling bread,
you do not know whether the buffer was found in the cache or
read. So a new flag (GB_CKHASH) and a pointer to a function to
perform the hash has been added to breadn_flags to say that the
function should be called to calculate a hash if the data has
been read. The check hash is placed in b_ckhash and the B_CKHASH
flag is set to indicate that a read was done and a check hash
calculated. Though a rather elaborate mechanism, it should
also work for check hashing other metadata in the future. A
kernel internal API change was to change breada into a static
fucntion and add flags and a function pointer to a check-hash
function.

sys/ufs/ffs/fs.h:
Add flags for types of check hashes; stored in a new word in the
superblock. Define corresponding BX_ flags for the different types
of check hashes. Add a check hash word in the cylinder group.

sys/ufs/ffs/ffs_alloc.c:
In ffs_getcg do the dance with breadn_flags to get a check hash and
if one is provided, check it.

sys/ufs/ffs/ffs_vfsops.c:
Copy across the BX_FFSTYPES flags in background writes.
Update the check hash when writing out buffers that need them.

sys/ufs/ffs/ffs_snapshot.c:
Recompute check hash when updating snapshot cylinder groups.

sys/libkern/crc32.c:
lib/libufs/Makefile:
lib/libufs/libufs.h:
lib/libufs/cgroup.c:
Include libkern/crc32.c in libufs and use it to compute check
hashes when updating cylinder groups.

Four utilities are affected:

sbin/newfs/mkfs.c:
Add the check hashes when building the cylinder groups.

sbin/fsck_ffs/fsck.h:
sbin/fsck_ffs/fsutil.c:
Verify and update check hashes when checking and writing cylinder groups.

sbin/fsck_ffs/pass5.c:
Offer to add check hashes to existing filesystems.
Precompute check hashes when rebuilding cylinder group
(although this will be done when it is written in fsutil.c
it is necessary to do it early before comparing with the old
cylinder group)

sbin/dumpfs/dumpfs.c
Print out the new check hash flag(s)

sbin/fsdb/Makefile:
Needs to add libufs now used by pass5.c imported from fsck_ffs.

Reviewed by: kib
Tested by: Peter Holm (pho)

Use SRCTOP-relative paths to other directories instead of .CURDIR-relative ones

This implifies pathing in make/displayed output

MFC after: 3 weeks
Sponsored by: Dell EMC Isilon

First pass through library packaging.

Sponsored by: The FreeBSD Foundation

Revert r284417 it is not necessary anymore

Enforce overwritting SHLIBDIR

Since METAMODE has been added, sys.mk loads bsd.mkopt.mk which ends load loading
bsd.own.mk which then defines SHLIBDIR before all the Makefile.inc everywhere.

This makes /lib being populated again.

Reported by: many

Remove the stray DEBUG_FLAGS=-g line that snuck in with the
soft-updates journaling project merge in r207141.

Bump shared libraries version numbers in preparation for 9.0.
This time, only libraries which ABI has been changed compared to
stable/8, are bumped.

ABI analysis done by: Gleb Kurtsou
Approved by: re (kensmith)

A new jail(8) with a configuration file, to replace the work currently done
by /etc/rc.d/jail.

- Merge soft-updates journaling from projects/suj/head into head. This
brings in support for an optional intent log which eliminates the need
for background fsck on unclean shutdown.

Sponsored by: iXsystems, Yahoo!, and Juniper.
With help from: McKusick and Peter Holm

Create the altix project branch. The altix project will add support
for the SGI Altix 350 to FreeBSD/ia64. The hardware used for porting
is a two-module system, consisting of a base compute module and a
CPU expansion module. SGI's NUMAFlex architecture can be an excellent
platform to test CPU affinity and NUMA-aware features in FreeBSD.

Back to WARNS=3. The breakage wasn't what I thought it was :(

Increased warnings weren't tested on ARM. Bump warnings back down to
0 until it can be properly tested by those raising the warnings.
Remember: make universe is required when changing the WARNS level.

Build lib/ with WARNS=6 by default.

Similar to libexec/, do the same with lib/. Make WARNS=6 the norm and
lower it when needed.

I'm setting WARNS?=0 for secure/. It seems secure/ includes the
Makefile.inc provided by lib/. I'm not going to touch that directory.
Most of the code there is contributed anyway.

- Import the HEAD csup code which is the basis for the cvsmode work.

Add a berase() function which uses ioctl(DIOCGDELETE) to erase a slab
of the disk.

Implement cgwrite1(3) function which stored a given cylinder group on disk.

Sponsored by: home.pl

minor style.Makefile(5) fixes:
- WARNS before CFLAGS
- CFLAGS -DXXX before -IXXX

Approved by: ru

Disconnect getino.3 and remove MLINK I added.

Discussed with: jmallett

Hook getino.3 up to the build and link it to putino.3.

PR: 83820

style.Makefile(5)

Stage 3 of dynamic root support. Make all the libraries needed to run
binaries in /bin and /sbin installed in /lib. Only the versioned files
reside in /lib, the .so symlink continues to live /usr/lib so the
toolchain doesn't need to be modified.

Commit rudimentary libufs manual pages, except for that for
getino(3)/putino(3), inode.c has been reworked in Perforce to the point
where a manual page may not be accurate. Certainly putino(3) has not
even been merged back yet.

These will need a lot of improvement for most applications, but they
document the API enough to get someone on their feet, most likely. The
best documentation still exists in the form of libufs(3) consumers in the
base system.

WARNS ?= 2, so idiocy like 1.12 of type.c doesn't have to happen again.

Add facility to read one, or a string of, cylinger groups.

Nuke dumb error reporting code, people can just use disk::d_error. Unify the
DEBUG and d_error initialisation into an ERROR macro, which can both trace and
set the d_error field. Much a more meaningful thing, I should say.

Add the concept of a per-disk error string, and a function which prints it
along with the errno, if one is set.

No need to explicitly set NOMAN here.

Reviewed by: jmallett

DEBUG is a knob that means something else in FreeBSD, use LIBUFS_DEBUG to
turn on tracing.

Add libufs, a library for dealing with UFS filesystems from userland to
the build. It is here to compartmentalise functionality currently duplicated
in many notable programs in the base system. It currently handles block
reads and writes, as well as reading and writing of the filesystem superblock,
and the reading/lookup of inode data. It supports both UFS and UFS2. I
will be maintaining it, and porting programs to use it, however for now, it
is simply being built as part of world.